J3_4V84_063

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V84|1|DA|U|504, 4V84|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_063 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2255

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V84|1|DA|G|30
4V84|1|DA|C|31
*
4V84|1|DA|G|474
4V84|1|DA|U|475
4V84|1|DA|G|476
4V84|1|DA|A|477
4V84|1|DA|A|478
4V84|1|DA|A|479
4V84|1|DA|A|480
4V84|1|DA|G|481
4V84|1|DA|A|482
4V84|1|DA|A|483
4V84|1|DA|C|484
*
4V84|1|DA|G|496
4V84|1|DA|A|497
4V84|1|DA|G|498
4V84|1|DA|U|499
4V84|1|DA|G|500
4V84|1|DA|A|501
4V84|1|DA|A|502
4V84|1|DA|A|503
4V84|1|DA|U|504
4V84|1|DA|A|505
4V84|1|DA|G|506
4V84|1|DA|A|507
4V84|1|DA|G|508
4V84|1|DA|C|509
4V84|1|DA|C|510

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24