J3_4V84_081

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V84_081 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1315

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4V84|1|CA|U|1073
4V84|1|CA|G|1074
*
4V84|1|CA|U|1083
4V84|1|CA|G|1084
4V84|1|CA|U|1085
4V84|1|CA|U|1086
*
4V84|1|CA|G|1099
4V84|1|CA|C|1100
4V84|1|CA|A|1101
4V84|1|CA|A|1102

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CE

30S ribosomal protein S5