J3_4V85_020

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V85_020 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.2218

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V85|1|AA|G|46
4V85|1|AA|C|47
*
4V85|1|AA|G|361
4V85|1|AA|G|362
4V85|1|AA|A|363
4V85|1|AA|A|364
4V85|1|AA|U|365
4V85|1|AA|A|366
4V85|1|AA|U|367
*
4V85|1|AA|A|393
4V85|1|AA|G|394
4V85|1|AA|C|395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12 1

Chain AP

30S ribosomal protein S16

Chain AW

Peptide chain release factor 3