3D structure

PDB id
4V85 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
4V85|1|BA|A|504, 4V85|1|BA|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V85_030 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.0814
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V85|1|BA|G|30
4V85|1|BA|C|31
*
4V85|1|BA|G|474
4V85|1|BA|C|475
4V85|1|BA|G|476
4V85|1|BA|A|477
4V85|1|BA|A|478
4V85|1|BA|A|479
4V85|1|BA|A|480
4V85|1|BA|G|481
4V85|1|BA|A|482
4V85|1|BA|A|483
4V85|1|BA|C|484
*
4V85|1|BA|G|496
4V85|1|BA|A|497
4V85|1|BA|G|498
4V85|1|BA|U|499
4V85|1|BA|G|500
4V85|1|BA|A|501
4V85|1|BA|A|502
4V85|1|BA|A|503
4V85|1|BA|A|504
4V85|1|BA|A|505
4V85|1|BA|G|506
4V85|1|BA|A|507
4V85|1|BA|A|508
4V85|1|BA|C|509
4V85|1|BA|C|510

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BU
50S ribosomal protein L20
Chain BW
50S ribosomal protein L22
Chain BY
50S ribosomal protein L24 1

Coloring options:


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