J3_4V87_027
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 4V87|1|CA|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V87_027 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1301
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
4V87|1|CA|C|1237
4V87|1|CA|A|1238
4V87|1|CA|A|1239
4V87|1|CA|U|1240
4V87|1|CA|G|1241
*
4V87|1|CA|C|1296
4V87|1|CA|C|1297
4V87|1|CA|C|1298
4V87|1|CA|A|1299
4V87|1|CA|G|1300
4V87|1|CA|U|1301
4V87|1|CA|U|1302
4V87|1|CA|C|1303
*
4V87|1|CA|G|1334
4V87|1|CA|C|1335
4V87|1|CA|C|1336
4V87|1|CA|G|1337
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CD
- Transfer RNA; tRNA
- Chain CJ
- 30S RIBOSOMAL PROTEIN S7
- Chain CP
- 30S RIBOSOMAL PROTEIN S13
- Chain CX
- 30S RIBOSOMAL PROTEIN THX
Coloring options: