J3_4V87_036
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V87_036 not in the Motif Atlas
- Homologous match to J3_7A0S_012
- Geometric discrepancy: 0.2169
- The information below is about J3_7A0S_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20574.1
- Basepair signature
- cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V87|1|DA|C|2789
4V87|1|DA|A|2790
4V87|1|DA|C|2791
*
4V87|1|DA|G|2805
4V87|1|DA|G|2807
4V87|1|DA|U|2808
4V87|1|DA|A|2809
4V87|1|DA|A|2810
4V87|1|DA|G|2811
*
4V87|1|DA|C|2889
4V87|1|DA|G|2891
4V87|1|DA|A|2892
4V87|1|DA|G|2893
4V87|1|DA|G|2894
Current chains
- Chain DA
- RNA (2909-MER)
Nearby chains
- Chain DE
- 50S ribosomal protein L3
- Chain DS
- 50S ribosomal protein L22
Coloring options: