J3_4V87_038

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V87|1|AA|U|504, 4V87|1|AA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V87_038 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0796

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V87|1|AA|G|30
4V87|1|AA|C|31
*
4V87|1|AA|G|474
4V87|1|AA|U|475
4V87|1|AA|G|476
4V87|1|AA|A|477
4V87|1|AA|A|478
4V87|1|AA|A|479
4V87|1|AA|A|480
4V87|1|AA|G|481
4V87|1|AA|A|482
4V87|1|AA|A|483
4V87|1|AA|C|484
*
4V87|1|AA|G|496
4V87|1|AA|A|497
4V87|1|AA|G|498
4V87|1|AA|U|499
4V87|1|AA|G|500
4V87|1|AA|A|501
4V87|1|AA|A|502
4V87|1|AA|A|503
4V87|1|AA|U|504
4V87|1|AA|A|505
4V87|1|AA|G|506
4V87|1|AA|A|507
4V87|1|AA|G|508
4V87|1|AA|C|509
4V87|1|AA|C|510

Current chains

Chain AA

RNA (2909-MER)

Nearby chains

Chain A1

50S ribosomal protein L20

Chain AS

50S ribosomal protein L22

Chain AU

50S ribosomal protein L24