J3_4V88_003
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 4V88|1|A1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_003 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.0398
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A1|A|828
4V88|1|A1|U|829
4V88|1|A1|A|830
4V88|1|A1|G|831
*
4V88|1|A1|C|863
4V88|1|A1|G|864
4V88|1|A1|U|865
4V88|1|A1|A|866
4V88|1|A1|G|867
*
4V88|1|A1|U|892
4V88|1|A1|C|893
4V88|1|A1|G|894
4V88|1|A1|A|895
4V88|1|A1|A|896
4V88|1|A1|U|897
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein L2-A
- Chain BR
- 60S ribosomal protein L19-A
- Chain Bg
- 60S ribosomal protein L34-A
- Chain Bp
- 60S ribosomal protein L43-A
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