J3_4V88_004

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V88_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.1025

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|G|1230
4V88|1|A1|A|1231
4V88|1|A1|C|1232
*
4V88|1|A1|G|1256
4V88|1|A1|C|1257
4V88|1|A1|U|1258
4V88|1|A1|A|1259
4V88|1|A1|A|1260
4V88|1|A1|G|1261
4V88|1|A1|G|1262
*
4V88|1|A1|C|1277
4V88|1|A1|A|1278
4V88|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains