J3_4V88_020
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4V88|1|A2|U|1473, 4V88|1|A2|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_020 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.0791
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A2|C|1470
4V88|1|A2|A|1471
4V88|1|A2|C|1472
4V88|1|A2|U|1473
4V88|1|A2|G|1474
*
4V88|1|A2|C|1533
4V88|1|A2|G|1534
4V88|1|A2|U|1535
4V88|1|A2|G|1536
4V88|1|A2|C|1537
4V88|1|A2|U|1538
4V88|1|A2|G|1539
4V88|1|A2|G|1540
*
4V88|1|A2|C|1571
4V88|1|A2|G|1572
4V88|1|A2|A|1573
4V88|1|A2|G|1574
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AS
- 40S ribosomal protein S18-A
- Chain AT
- 40S ribosomal protein S19-A
- Chain AZ
- 40S ribosomal protein S25-A
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