J3_4V88_032

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V88|1|A6|A|760
4V88|1|A6|G|761
4V88|1|A6|A|762
4V88|1|A6|G|763
*
4V88|1|A6|C|773
4V88|1|A6|A|774
4V88|1|A6|G|775
*
4V88|1|A6|U|785
4V88|1|A6|C|786
4V88|1|A6|G|787
4V88|1|A6|A|788
4V88|1|A6|A|789
4V88|1|A6|U|790

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CE

40S ribosomal protein S4-A

Chain CJ

40S ribosomal protein S9-A

Chain CY

40S ribosomal protein S24-A