Motif J3_54972.1 Version J3_54972.1 of this group appears in releases 3.80 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-13 | 2-12 | 5-8 | 6-7 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_035 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | U | 769 | C | 770 | G | 771 | A | 772 | A | 773 | U | 774 | * | A | 745 | G | 746 | A | 747 | G | 748 | * | C | 758 | A | 759 | G | 760 | cWW | tWW | tHS | cWW | cWW | |
| 2 | J3_4V88_032 | 4V88 | 0.1096 | 0 | A6 | SSU rRNA | U | 785 | C | 786 | G | 787 | A | 788 | A | 789 | U | 790 | * | A | 760 | G | 761 | A | 762 | G | 763 | * | C | 773 | A | 774 | G | 775 | cWW | tWW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAG*CAG*UCGAAU | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*A*CGAA | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Heat map statistics
- Min 0.11 | Avg 0.05 | Max 0.11
Coloring options: