J3_4V88_035
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V88|1|A6|C|1161
4V88|1|A6|C|1162
4V88|1|A6|A|1163
4V88|1|A6|G|1164
*
4V88|1|A6|C|1581
4V88|1|A6|U|1582
4V88|1|A6|A|1583
4V88|1|A6|G|1584
4V88|1|A6|U|1585
4V88|1|A6|A|1586
4V88|1|A6|A|1587
*
4V88|1|A6|U|1609
4V88|1|A6|G|1610
4V88|1|A6|A|1611
4V88|1|A6|U|1612
4V88|1|A6|U|1613
4V88|1|A6|A|1614
4V88|1|A6|C|1615
4V88|1|A6|G|1616
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CF
- 40S ribosomal protein S5
- Chain CQ
- 40S ribosomal protein S16-A
- Chain Cc
- 40S ribosomal protein S28-A
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