Motif J3_25303.1 Version J3_25303.1 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-18 | 3-17 | 4-12 | 4-15 | 5-11 | 5-14 | 5-15 | 7-10 | 8-9 | 12-13 | 16-17 | |||||||||||||||||||
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1 | J3_6CZR_061 | 6CZR | 0.1041 | 0 | 1a | SSU rRNA | U | 1355 | G | 1356 | A | 1357 | A | 1358 | U | 1359 | A | 1360 | C | 1361 | G | 1362 | * | C | 914 | A | 915 | A | 916 | G | 917 | * | C | 1326 | U | 1327 | A | 1328 | G | 1329 | U | 1330 | A | 1331 | A | 1332 | cWW | tSH | ntHW | csS | tHH | cSs | tWWa | ntHS | cWW | cWW | ncSH | |
2 | J3_4LFB_002 | 4LFB | 0.0000 | 0 | A | SSU rRNA | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | * | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | cWW | tSH | tHW | csS | tHH | cSs | tWWa | tHS | cWW | cWW | cSH | |
3 | J3_5J7L_052 | 5J7L | 0.0589 | 0 | AA | SSU rRNA | U | 1372 | G | 1373 | A | 1374 | A | 1375 | U | 1376 | A | 1377 | C | 1378 | G | 1379 | * | C | 936 | A | 937 | A | 938 | G | 939 | * | C | 1344 | U | 1345 | A | 1346 | G | 1347 | U | 1348 | A | 1349 | A | 1350 | cWW | tSH | tHW | csS | tHH | cSs | tWWa | tHS | cWW | cWW | cSH | |
4 | J3_4V88_035 | 4V88 | 0.5785 | 0 | A6 | SSU rRNA | U | 1609 | G | 1610 | A | 1611 | U | 1612 | U | 1613 | A | 1614 | C | 1615 | G | 1616 | * | C | 1161 | C | 1162 | A | 1163 | G | 1164 | * | C | 1581 | U | 1582 | A | 1583 | G | 1584 | U | 1585 | A | 1586 | A | 1587 | cWW | tSH | tHW | cSs | tWWa | ntHH | cWW | cWW | cSH | |||
5 | J3_8C3A_038 | 8C3A | 0.5825 | 0 | CM | SSU rRNA | U | 1596 | G | 1597 | A | 1598 | U | 1599 | U | 1600 | A | 1601 | C | 1602 | G | 1603 | * | C | 1146 | C | 1147 | A | 1148 | G | 1149 | * | C | 1568 | U | 1569 | A | 1570 | G | 1571 | U | 1572 | A | 1573 | A | 1574 | cWW | tSH | tHW | cSs | tWWa | tHH | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAG*CUAGUAA*UGAAUACG | 3 |
CCAG*CUAGUAA*UGAUUACG | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*UAGUA*GAAUAC | 3 |
CA*UAGUA*GAUUAC | 2 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.31 | Max 0.60
Coloring options: