#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8break 9 10 11 12break 13 14 15 16 17 18 191-192-183-174-124-155-115-145-157-108-912-1316-17
1 J3_6CZR_0616CZR0.104101a SSU rRNAU1355G1356A1357A1358U1359A1360C1361G1362*C914A915A916G917*C1326U1327A1328G1329U1330A1331A1332cWWtSHntHWcsStHHcSstWWantHScWWcWWncSH
2 J3_4LFB_0024LFB0.00000A SSU rRNAU1372G1373A1374A1375U1376A1377C1378G1379*C936A937A938G939*C1344U1345A1346G1347U1348A1349A1350cWWtSHtHWcsStHHcSstWWatHScWWcWWcSH
3 J3_5J7L_0525J7L0.05890AA SSU rRNAU1372G1373A1374A1375U1376A1377C1378G1379*C936A937A938G939*C1344U1345A1346G1347U1348A1349A1350cWWtSHtHWcsStHHcSstWWatHScWWcWWcSH
4 J3_4V88_0354V880.57850A6 SSU rRNAU1609G1610A1611U1612U1613A1614C1615G1616*C1161C1162A1163G1164*C1581U1582A1583G1584U1585A1586A1587cWWtSHtHWcSstWWantHHcWWcWWcSH
5 J3_8C3A_0388C3A0.58250CM SSU rRNAU1596G1597A1598U1599U1600A1601C1602G1603*C1146C1147A1148G1149*C1568U1569A1570G1571U1572A1573A1574cWWtSHtHWcSstWWatHHcWWcWWcSH

3D structures

Complete motif including flanking bases
SequenceCounts
CAAG*CUAGUAA*UGAAUACG3
CCAG*CUAGUAA*UGAUUACG2
Non-Watson-Crick part of the motif
SequenceCounts
AA*UAGUA*GAAUAC3
CA*UAGUA*GAUUAC2

Release history

Release3.883.893.90
Date2024-09-112024-10-092024-11-06
StatusNew id, 1 parentExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.31 | Max 0.60
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