J3_4V88_037
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4V88|1|A6|G|1199, 4V88|1|A6|G|1201, 4V88|1|A6|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.2
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V88|1|A6|C|1180
4V88|1|A6|U|1181
4V88|1|A6|U|1182
4V88|1|A6|A|1183
4V88|1|A6|A|1184
4V88|1|A6|U|1185
4V88|1|A6|U|1186
4V88|1|A6|U|1187
*
4V88|1|A6|G|1198
4V88|1|A6|G|1199
4V88|1|A6|G|1200
4V88|1|A6|G|1201
4V88|1|A6|A|1202
4V88|1|A6|A|1203
4V88|1|A6|A|1204
4V88|1|A6|C|1205
4V88|1|A6|U|1206
4V88|1|A6|C|1207
4V88|1|A6|A|1208
4V88|1|A6|C|1209
*
4V88|1|A6|G|1454
4V88|1|A6|G|1455
4V88|1|A6|C|1456
4V88|1|A6|C|1457
4V88|1|A6|G|1458
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CP
- 40S ribosomal protein S15
- Chain CS
- 40S ribosomal protein S18-A
- Chain CU
- 40S ribosomal protein S20
- Chain Cd
- 40S ribosomal protein S29-A
- Chain Cf
- 40S ribosomal protein S31
- Chain Ch
- Suppressor protein STM1
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