Motif J3_83516.2 Version J3_83516.2 of this group appears in releases 3.80 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 1-22 | 6-12 | 7-11 | 9-10 | 10-19 | 14-15 | 16-20 | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8C3A_040 | 8C3A | 0.1275 | 3 | CM | SSU rRNA | G | 1183 | G | 1185 | A | 1187 | A | 1189 | C | 1190 | U | 1191 | C | 1192 | A | 1193 | C | 1194 | * | G | 1440 | G | 1441 | C | 1442 | C | 1443 | G | 1444 | * | C | 1165 | U | 1166 | U | 1167 | A | 1168 | A | 1169 | U | 1170 | U | 1171 | U | 1172 | cWW | ncWW | cWW | tsS | cWW | tWWa | |
| 2 | J3_4V88_037 | 4V88 | 0.1076 | 3 | A6 | SSU rRNA | G | 1198 | G | 1200 | A | 1202 | A | 1204 | C | 1205 | U | 1206 | C | 1207 | A | 1208 | C | 1209 | * | G | 1454 | G | 1455 | C | 1456 | C | 1457 | G | 1458 | * | C | 1180 | U | 1181 | U | 1182 | A | 1183 | A | 1184 | U | 1185 | U | 1186 | U | 1187 | cWW | cWW | tsS | cWW | tWWa | ||
| 3 | J3_4LFB_004 | 4LFB | 0.0000 | 3 | A | SSU rRNA | G | 973 | A | 974 | A | 977 | C | 979 | C | 980 | U | 981 | U | 982 | A | 983 | C | 984 | * | G | 1221 | G | 1222 | C | 1223 | G | 1224 | A | 1225 | * | U | 955 | U | 956 | U | 957 | A | 958 | A | 959 | U | 960 | U | 961 | C | 962 | cWW | ncWW | cWW | tsS | cWW | tWWa | |
| 4 | J3_5J7L_006 | 5J7L | 0.0764 | 3 | AA | SSU rRNA | G | 973 | A | 974 | A | 977 | C | 979 | C | 980 | U | 981 | U | 982 | A | 983 | C | 984 | * | G | 1221 | G | 1222 | C | 1223 | U | 1224 | A | 1225 | * | U | 955 | U | 956 | U | 957 | A | 958 | A | 959 | U | 960 | U | 961 | C | 962 | cWW | ncWW | ncWW | cWW | tsS | cWW | tWWa |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAAUUU*GGGGAAACUCAC*GGCCG | 2 |
| UUUAAUUC*GAAGAACCUUAC*GGCGA | 1 |
| UUUAAUUC*GAAGAACCUUAC*GGCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUU*GGGAAACUCA*GCC | 2 |
| UUAAUU*AAGAACCUUA*GCG | 1 |
| UUAAUU*AAGAACCUUA*GCU | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-F-F-F-F-F-cWW-cWW-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.08 | Max 0.14
Coloring options: