J3_4V88_038

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

4V88|1|A6|A|1217, 4V88|1|A6|G|1445, 4V88|1|A6|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4V88|1|A6|C|1215
4V88|1|A6|C|1216
4V88|1|A6|A|1217
4V88|1|A6|G|1218
4V88|1|A6|A|1219
4V88|1|A6|C|1220
*
4V88|1|A6|G|1263
4V88|1|A6|G|1264
4V88|1|A6|G|1265
4V88|1|A6|U|1266
4V88|1|A6|G|1267
*
4V88|1|A6|U|1442
4V88|1|A6|U|1443
4V88|1|A6|A|1444
4V88|1|A6|G|1445
4V88|1|A6|A|1446
4V88|1|A6|C|1447
4V88|1|A6|G|1448

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CK

40S ribosomal protein S10-A

Chain Cd

40S ribosomal protein S29-A

Chain Cf

40S ribosomal protein S31