J3_4V88_056

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V88_056 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0507

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A2|A|41
4V88|1|A2|G|42
*
4V88|1|A2|C|433
4V88|1|A2|G|434
4V88|1|A2|C|435
4V88|1|A2|A|436
4V88|1|A2|A|437
4V88|1|A2|A|438
4V88|1|A2|U|439
*
4V88|1|A2|A|464
4V88|1|A2|G|465
4V88|1|A2|U|466

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AJ

40S ribosomal protein S9-A

Chain AX

40S ribosomal protein S23-A