J3_4V88_068
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_068 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0412
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A5|A|369
4V88|1|A5|U|370
4V88|1|A5|G|371
4V88|1|A5|A|372
4V88|1|A5|A|373
4V88|1|A5|A|374
4V88|1|A5|A|375
4V88|1|A5|G|376
*
4V88|1|A5|C|403
4V88|1|A5|G|404
*
4V88|1|A8|C|19
4V88|1|A8|U|20
Current chains
- Chain A5
- 25S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain DC
- 60S ribosomal protein L4-A
- Chain DP
- 60S ribosomal protein L17-A
- Chain DY
- 60S ribosomal protein L26-A
- Chain Dl
- 60S ribosomal protein L39
Coloring options: