J3_4V88_070
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 4V88|1|A5|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_070 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0381
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83726.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A5|U|502
4V88|1|A5|C|503
*
4V88|1|A5|G|588
4V88|1|A5|A|589
4V88|1|A5|G|590
4V88|1|A5|G|591
4V88|1|A5|A|592
4V88|1|A5|C|593
4V88|1|A5|U|594
4V88|1|A5|G|595
4V88|1|A5|C|596
4V88|1|A5|G|597
*
4V88|1|A5|C|606
4V88|1|A5|A|607
4V88|1|A5|A|608
4V88|1|A5|G|609
4V88|1|A5|G|610
4V88|1|A5|A|611
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain DC
- 60S ribosomal protein L4-A
- Chain DE
- 60S ribosomal protein L6-A
- Chain DF
- 60S ribosomal protein L7-A
- Chain De
- 60S ribosomal protein L32
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