J3_8P9A_048

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

8P9A|1|AR|A|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83726.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|U|502
8P9A|1|AR|C|503
*
8P9A|1|AR|G|588
8P9A|1|AR|A|589
8P9A|1|AR|G|590
8P9A|1|AR|G|591
8P9A|1|AR|A|592
8P9A|1|AR|C|593
8P9A|1|AR|U|594
8P9A|1|AR|G|595
8P9A|1|AR|C|596
8P9A|1|AR|G|597
*
8P9A|1|AR|C|606
8P9A|1|AR|A|607
8P9A|1|AR|A|608
8P9A|1|AR|G|609
8P9A|1|AR|G|610
8P9A|1|AR|A|611

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain CH

60S ribosomal protein L6-A

Chain CI

60S ribosomal protein L7-A

Chain DG

60S ribosomal protein L32