J3_4V88_071
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 4V88|1|A5|A|1065, 4V88|1|A5|U|1094, 4V88|1|A5|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V88_071 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.5381
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A5|U|986
4V88|1|A5|U|987
*
4V88|1|A5|A|1062
4V88|1|A5|G|1063
4V88|1|A5|A|1064
4V88|1|A5|A|1065
4V88|1|A5|G|1066
*
4V88|1|A5|C|1092
4V88|1|A5|A|1093
4V88|1|A5|U|1094
4V88|1|A5|U|1095
4V88|1|A5|U|1096
4V88|1|A5|G|1097
4V88|1|A5|A|1098
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain DF
- 60S ribosomal protein L7-A
- Chain DT
- 60S ribosomal protein L21-A
- Chain Db
- 60S ribosomal protein L29
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