J3_8P9A_051

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

8P9A|1|AR|A|1065, 8P9A|1|AR|U|1094, 8P9A|1|AR|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8P9A|1|AR|U|986
8P9A|1|AR|U|987
*
8P9A|1|AR|A|1062
8P9A|1|AR|G|1063
8P9A|1|AR|A|1064
8P9A|1|AR|A|1065
8P9A|1|AR|G|1066
*
8P9A|1|AR|C|1092
8P9A|1|AR|A|1093
8P9A|1|AR|U|1094
8P9A|1|AR|U|1095
8P9A|1|AR|U|1096
8P9A|1|AR|G|1097
8P9A|1|AR|A|1098

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L7-A

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29