J3_4V88_075

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V88_075 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0577

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4V88|1|A5|A|1654
4V88|1|A5|G|1655
4V88|1|A5|A|1656
4V88|1|A5|C|1657
4V88|1|A5|G|1658
*
4V88|1|A5|C|1791
4V88|1|A5|C|1792
*
4V88|1|A5|G|1796
4V88|1|A5|A|1797
4V88|1|A5|A|1798
4V88|1|A5|A|1799
4V88|1|A5|A|1800
4V88|1|A5|U|1801

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DA

60S ribosomal protein L2-A

Chain Dg

60S ribosomal protein L34-A

Chain Dp

60S ribosomal protein L43-A