J3_4V88_081
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 4V88|1|A6|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.1
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A6|U|633
4V88|1|A6|G|634
4V88|1|A6|A|635
*
4V88|1|A6|U|861
4V88|1|A6|A|862
4V88|1|A6|A|863
4V88|1|A6|U|864
4V88|1|A6|A|865
4V88|1|A6|G|866
*
4V88|1|A6|C|962
4V88|1|A6|A|963
4V88|1|A6|U|964
4V88|1|A6|U|965
4V88|1|A6|A|966
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CH
- 40S ribosomal protein S7-A
- Chain CL
- 40S ribosomal protein S11-A
- Chain CN
- 40S ribosomal protein S13
- Chain CW
- 40S ribosomal protein S22-A
- Chain CX
- 40S ribosomal protein S23-A
- Chain Cb
- 40S ribosomal protein S27-A
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