Motif J3_17385.1 Version J3_17385.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-4 | 2-11 | 3-10 | 4-11 | 5-6 | 8-9 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_6CZR_077 | 6CZR | 0.2679 | 1 | 1a | SSU rRNA | U | 735 | G | 736 | A | 737 | C | 738 | G | 739 | * | C | 570 | G | 571 | G | 572 | * | C | 635 | U | 636 | G | 638 | A | 639 | cWW | tHW | cWW | cWW | ncWW | ||
2 | J3_4LFB_015 | 4LFB | 0.0877 | 1 | A | SSU rRNA | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | * | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | cWW | tSH | tHW | cWW | cWW | cWW | |
3 | J3_5J7L_051 | 5J7L | 0.0000 | 1 | AA | SSU rRNA | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | * | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | cWW | ncSH | tSH | tHW | cWW | cWW | cWW |
4 | J3_1KUQ_002 | 1KUQ | 0.1080 | 1 | B | 16S RIBOSOMAL RNA FRAGMENT | U | 50 | G | 51 | A | 52 | C | 53 | G | 54 | * | C | 4 | G | 5 | G | 6 | * | C | 15 | U | 16 | G | 18 | A | 19 | cWW | ncSH | tSH | tHW | cWW | cWW | cWW |
5 | J3_1G1X_005 | 1G1X | 0.1433 | 1 | E+D | 16S RIBOSOMAL RNA | U | 751 | G | 752 | A | 753 | C | 754 | G | 755 | * | C | 586 | G | 587 | G | 588 | * | C | 651 | U | 652 | G | 654 | A | 655 | cWW | ncSH | tSH | tHW | cWW | cWW | cWW |
6 | J3_4V88_081 | 4V88 | 0.4472 | 2 | A6 | SSU rRNA | C | 962 | A | 963 | U | 964 | U | 965 | A | 966 | * | U | 633 | G | 634 | A | 635 | * | U | 861 | A | 862 | A | 865 | G | 866 | cWW | ntHS | cWW | cWW | cWW | ||
7 | J3_8C3A_034 | 8C3A | 0.5865 | 2 | CM | SSU rRNA | C | 947 | A | 948 | U | 949 | U | 950 | A | 951 | * | U | 631 | G | 632 | A | 633 | * | U | 846 | A | 847 | A | 850 | G | 851 | cWW | ntSW | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGG*CUAGA*UGACG | 4 |
UGA*UAAUAG*CAUUA | 2 |
CGG*CUUGA*UGACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
G*UAG*GAC | 4 |
G*AAUA*AUU | 2 |
G*UUG*GAC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.31 | Max 0.62
Coloring options: