J3_4V88_082

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.1

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V88|1|A6|U|1293
4V88|1|A6|G|1294
*
4V88|1|A6|U|1303
4V88|1|A6|G|1304
4V88|1|A6|U|1305
4V88|1|A6|C|1306
*
4V88|1|A6|G|1318
4V88|1|A6|A|1319
4V88|1|A6|U|1320
4V88|1|A6|A|1321
4V88|1|A6|A|1322

Current chains

Chain A6

18S rRNA

Nearby chains

Chain CA

40S ribosomal protein S0-A

Chain CC

40S ribosomal protein S2

Chain CR

40S ribosomal protein S17-A