Motif J3_76043.1 Version J3_76043.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 4-7 | 5-6 | 6-9 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_009 | 5J7L | 0.4035 | 1 | AA | SSU rRNA | C | 1098 | G | 1099 | C | 1100 | A | 1101 | A | 1102 | * | U | 1073 | G | 1074 | * | U | 1083 | G | 1084 | U | 1085 | G | 1087 | cWW | tSs | cWW | cWW | |
| 2 | J3_8C3A_085 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | G | 1303 | A | 1304 | U | 1305 | A | 1306 | A | 1307 | * | U | 1278 | G | 1279 | * | U | 1288 | G | 1289 | U | 1290 | C | 1291 | cWW | ntSs | cWW | ntHS | cWW |
| 3 | J3_4V88_082 | 4V88 | 0.0775 | 0 | A6 | SSU rRNA | G | 1318 | A | 1319 | U | 1320 | A | 1321 | A | 1322 | * | U | 1293 | G | 1294 | * | U | 1303 | G | 1304 | U | 1305 | C | 1306 | cWW | tSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*UGUC*GAUAA | 2 |
| UG*UGUUG*CGCAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GU*AUA | 2 |
| *GUU*GCA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.20 | Max 0.40
Coloring options: