J3_4V88_083
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 4V88|1|A6|U|1390, 4V88|1|A6|U|1413, 4V88|1|A6|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68542.1
- Basepair signature
- cWW-tWH-cWW-tSW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A6|A|1336
4V88|1|A6|A|1337
4V88|1|A6|C|1338
*
4V88|1|A6|G|1386
4V88|1|A6|G|1387
4V88|1|A6|A|1388
4V88|1|A6|C|1389
4V88|1|A6|U|1390
4V88|1|A6|A|1391
*
4V88|1|A6|U|1407
4V88|1|A6|G|1408
4V88|1|A6|G|1409
4V88|1|A6|A|1410
4V88|1|A6|A|1411
4V88|1|A6|G|1412
4V88|1|A6|U|1413
4V88|1|A6|U|1414
4V88|1|A6|U|1415
Current chains
- Chain A6
- 18S rRNA
Nearby chains
- Chain CF
- 40S ribosomal protein S5
- Chain CQ
- 40S ribosomal protein S16-A
- Chain CR
- 40S ribosomal protein S17-A
- Chain CU
- 40S ribosomal protein S20
- Chain Cd
- 40S ribosomal protein S29-A
- Chain Cg
- Guanine nucleotide-binding protein subunit beta-like protein (ASC1, RACK1)
Coloring options: