J3_4V8A_033

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V8A|1|AA|U|504, 4V8A|1|AA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_033 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0493

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V8A|1|AA|G|30
4V8A|1|AA|C|31
*
4V8A|1|AA|G|474
4V8A|1|AA|U|475
4V8A|1|AA|G|476
4V8A|1|AA|A|477
4V8A|1|AA|A|478
4V8A|1|AA|A|479
4V8A|1|AA|A|480
4V8A|1|AA|G|481
4V8A|1|AA|A|482
4V8A|1|AA|A|483
4V8A|1|AA|C|484
*
4V8A|1|AA|G|496
4V8A|1|AA|A|497
4V8A|1|AA|G|498
4V8A|1|AA|U|499
4V8A|1|AA|G|500
4V8A|1|AA|A|501
4V8A|1|AA|A|502
4V8A|1|AA|A|503
4V8A|1|AA|U|504
4V8A|1|AA|A|505
4V8A|1|AA|G|506
4V8A|1|AA|A|507
4V8A|1|AA|G|508
4V8A|1|AA|C|509
4V8A|1|AA|C|510

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L20

Chain AW

50S ribosomal protein L22

Chain AY

50S ribosomal protein L24