J3_4V8A_037

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V8A|1|AA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_037 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0654

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8A|1|AA|C|297
4V8A|1|AA|G|298
4V8A|1|AA|A|299
4V8A|1|AA|A|300
4V8A|1|AA|G|301
*
4V8A|1|AA|C|316
4V8A|1|AA|G|317
4V8A|1|AA|C|318
4V8A|1|AA|C|319
4V8A|1|AA|A|320
4V8A|1|AA|G|321
4V8A|1|AA|A|322
4V8A|1|AA|G|323
4V8A|1|AA|A|324
4V8A|1|AA|G|325
*
4V8A|1|AA|C|337
4V8A|1|AA|G|338
4V8A|1|AA|U|339
4V8A|1|AA|A|340
4V8A|1|AA|G|341

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AY

50S ribosomal protein L24