J3_4V8A_039

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_039 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0651

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8A|1|AA|G|1424
4V8A|1|AA|G|1425
4V8A|1|AA|G|1426
4V8A|1|AA|A|1427
4V8A|1|AA|C|1428
4V8A|1|AA|G|1429
*
4V8A|1|AA|C|1564
4V8A|1|AA|C|1565
*
4V8A|1|AA|G|1568
4V8A|1|AA|A|1569
4V8A|1|AA|A|1570
4V8A|1|AA|A|1571
4V8A|1|AA|A|1572
4V8A|1|AA|G|1573
4V8A|1|AA|C|1574

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2