J3_4V8A_042

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_042 not in the Motif Atlas

Geometric match to J3_8VTW_036

Geometric discrepancy: 0.056

The information below is about J3_8VTW_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V8A|1|BA|G|30
4V8A|1|BA|C|31
*
4V8A|1|BA|G|474
4V8A|1|BA|U|475
4V8A|1|BA|G|476
4V8A|1|BA|A|477
4V8A|1|BA|A|478
4V8A|1|BA|A|479
4V8A|1|BA|A|480
4V8A|1|BA|G|481
*
4V8A|1|BA|C|509
4V8A|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L20

Chain BW

50S ribosomal protein L22

Chain BY

50S ribosomal protein L24