J3_4V8A_048

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

4V8A|1|BA|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8A_048 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0645

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8A|1|BA|G|1344
4V8A|1|BA|C|1345
4V8A|1|BA|G|1346
4V8A|1|BA|G|1347
4V8A|1|BA|G|1348
4V8A|1|BA|A|1349
4V8A|1|BA|C|1350
*
4V8A|1|BA|G|1381
4V8A|1|BA|G|1382
4V8A|1|BA|C|1383
4V8A|1|BA|A|1384
4V8A|1|BA|G|1385
*
4V8A|1|BA|C|1402
4V8A|1|BA|C|1403

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L23