J3_9DFE_012

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

9DFE|1|1A|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9DFE|1|1A|G|1344
9DFE|1|1A|C|1345
9DFE|1|1A|G|1346
9DFE|1|1A|G|1347
9DFE|1|1A|G|1348
9DFE|1|1A|A|1349
9DFE|1|1A|C|1350
*
9DFE|1|1A|G|1381
9DFE|1|1A|G|1382
9DFE|1|1A|C|1383
9DFE|1|1A|A|1384
9DFE|1|1A|G|1385
*
9DFE|1|1A|C|1402
9DFE|1|1A|C|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23