J3_4V8B_079

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

4V8B|1|DA|A|1084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8B_079 not in the Motif Atlas

Homologous match to J3_9DFE_009

Geometric discrepancy: 0.3753

The information below is about J3_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8B|1|DA|G|1055
4V8B|1|DA|G|1056
4V8B|1|DA|A|1057
*
4V8B|1|DA|U|1081
4V8B|1|DA|U|1082
4V8B|1|DA|U|1083
4V8B|1|DA|A|1084
4V8B|1|DA|A|1085
4V8B|1|DA|A|1086
4V8B|1|DA|G|1087
*
4V8B|1|DA|C|1102
4V8B|1|DA|A|1103
4V8B|1|DA|C|1104

Current chains

Chain DA

RNA (2912-MER)

Nearby chains