3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8C_006 not in the Motif Atlas
Homologous match to J3_7RQB_010
Geometric discrepancy: 0.0624
The information below is about J3_7RQB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89368.3
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

4V8C|1|AA|U|2091
4V8C|1|AA|U|2092
4V8C|1|AA|G|2093
*
4V8C|1|AA|C|2196
4V8C|1|AA|U|2197
4V8C|1|AA|A|2198
4V8C|1|AA|A|2199
4V8C|1|AA|C|2205
*
4V8C|1|AA|G|2219
4V8C|1|AA|G|2224
4V8C|1|AA|A|2225
4V8C|1|AA|C|2226
4V8C|1|AA|A|2227
4V8C|1|AA|G|2228

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain AD
50S ribosomal protein L2
Chain AK
50S ribosomal protein L9
Chain AZ
50S ribosomal protein L28

Coloring options:


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