J3_4V8C_006

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8C_006 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0624

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V8C|1|AA|U|2091
4V8C|1|AA|U|2092
4V8C|1|AA|G|2093
*
4V8C|1|AA|C|2196
4V8C|1|AA|U|2197
4V8C|1|AA|A|2198
4V8C|1|AA|A|2199
4V8C|1|AA|C|2205
*
4V8C|1|AA|G|2219
4V8C|1|AA|G|2224
4V8C|1|AA|A|2225
4V8C|1|AA|C|2226
4V8C|1|AA|A|2227
4V8C|1|AA|G|2228

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AK

50S ribosomal protein L9

Chain AZ

50S ribosomal protein L28