J3_4V8C_042

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V8C|1|AA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8C_042 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0731

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8C|1|AA|C|297
4V8C|1|AA|G|298
4V8C|1|AA|A|299
4V8C|1|AA|A|300
4V8C|1|AA|G|301
*
4V8C|1|AA|C|316
4V8C|1|AA|G|317
4V8C|1|AA|C|318
4V8C|1|AA|C|319
4V8C|1|AA|A|320
4V8C|1|AA|G|321
4V8C|1|AA|A|322
4V8C|1|AA|G|323
4V8C|1|AA|A|324
4V8C|1|AA|G|325
*
4V8C|1|AA|C|337
4V8C|1|AA|G|338
4V8C|1|AA|U|339
4V8C|1|AA|A|340
4V8C|1|AA|G|341

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AU

50S ribosomal protein L24