J3_4V8C_049

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V8C|1|BA|U|504, 4V8C|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8C_049 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0578

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8C|1|BA|G|30
4V8C|1|BA|C|31
*
4V8C|1|BA|G|474
4V8C|1|BA|U|475
4V8C|1|BA|G|476
4V8C|1|BA|A|477
4V8C|1|BA|A|478
4V8C|1|BA|A|479
4V8C|1|BA|A|480
4V8C|1|BA|G|481
4V8C|1|BA|A|482
4V8C|1|BA|A|483
4V8C|1|BA|C|484
*
4V8C|1|BA|G|496
4V8C|1|BA|A|497
4V8C|1|BA|G|498
4V8C|1|BA|U|499
4V8C|1|BA|G|500
4V8C|1|BA|A|501
4V8C|1|BA|A|502
4V8C|1|BA|A|503
4V8C|1|BA|U|504
4V8C|1|BA|A|505
4V8C|1|BA|G|506
4V8C|1|BA|A|507
4V8C|1|BA|G|508
4V8C|1|BA|C|509
4V8C|1|BA|C|510

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B1

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24