J3_4V8C_071
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 4V8C|1|DA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8C_071 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.1551
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V8C|1|DA|U|672
4V8C|1|DA|G|673
*
4V8C|1|DA|C|717
4V8C|1|DA|G|718
4V8C|1|DA|C|719
4V8C|1|DA|C|720
4V8C|1|DA|G|721
4V8C|1|DA|A|722
4V8C|1|DA|U|723
4V8C|1|DA|G|724
4V8C|1|DA|G|725
*
4V8C|1|DA|C|732
4V8C|1|DA|A|733
4V8C|1|DA|G|734
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L2
- Chain DI
- 30S RIBOSOMAL PROTEIN S6
- Chain DN
- 30S RIBOSOMAL PROTEIN S11
- Chain DR
- 30S RIBOSOMAL PROTEIN S15
- Chain DU
- 30S RIBOSOMAL PROTEIN S18
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