J3_4V8D_017

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8D_017 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.1644

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8D|1|BA|C|2789
4V8D|1|BA|A|2790
4V8D|1|BA|C|2791
*
4V8D|1|BA|G|2805
4V8D|1|BA|G|2807
4V8D|1|BA|U|2808
4V8D|1|BA|A|2809
4V8D|1|BA|A|2810
4V8D|1|BA|G|2811
*
4V8D|1|BA|C|2889
4V8D|1|BA|G|2891
4V8D|1|BA|A|2892
4V8D|1|BA|G|2893
4V8D|1|BA|G|2894

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BE

50S ribosomal protein L3