3D structure

PDB id
4V8D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
4V8D|1|AA|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8D_044 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.2441
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_40706.1
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V8D|1|AA|C|1116
4V8D|1|AA|G|1117
4V8D|1|AA|C|1118
*
4V8D|1|AA|G|1155
4V8D|1|AA|G|1156
4V8D|1|AA|A|1157
4V8D|1|AA|C|1158
4V8D|1|AA|U|1159
4V8D|1|AA|G|1160
4V8D|1|AA|C|1161
*
4V8D|1|AA|G|1175
4V8D|1|AA|A|1176
4V8D|1|AA|G|1177
4V8D|1|AA|G|1178
4V8D|1|AA|A|1179
4V8D|1|AA|A|1180
4V8D|1|AA|G|1181
4V8D|1|AA|G|1182
4V8D|1|AA|A|1183
4V8D|1|AA|G|1184

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AE
30S RIBOSOMAL PROTEIN S2
Chain AL
30S RIBOSOMAL PROTEIN S9
Chain AM
30S RIBOSOMAL PROTEIN S10
Chain AQ
30S RIBOSOMAL PROTEIN S14

Coloring options:


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