J3_4V8D_075

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

4V8D|1|BA|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8D_075 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0623

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4V8D|1|BA|C|297
4V8D|1|BA|G|298
4V8D|1|BA|A|299
4V8D|1|BA|A|300
4V8D|1|BA|G|301
*
4V8D|1|BA|C|316
4V8D|1|BA|G|317
4V8D|1|BA|C|318
4V8D|1|BA|C|319
4V8D|1|BA|A|320
4V8D|1|BA|G|321
4V8D|1|BA|A|322
4V8D|1|BA|G|323
4V8D|1|BA|A|324
4V8D|1|BA|G|325
*
4V8D|1|BA|C|337
4V8D|1|BA|G|338
4V8D|1|BA|U|339
4V8D|1|BA|A|340
4V8D|1|BA|G|341

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24