J3_4V8E_023

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4V8E|1|CA|A|1656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8E_023 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0587

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4V8E|1|CA|C|1353
4V8E|1|CA|A|1354
4V8E|1|CA|A|1355
4V8E|1|CA|G|1356
*
4V8E|1|CA|C|1652
4V8E|1|CA|G|1653
4V8E|1|CA|C|1654
4V8E|1|CA|A|1655
4V8E|1|CA|A|1656
4V8E|1|CA|A|1657
4V8E|1|CA|C|1658
*
4V8E|1|CA|G|1667
4V8E|1|CA|U|1668
4V8E|1|CA|G|1669

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain C7

50S ribosomal protein L34