J3_4V8E_035

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGC*GGACU*GGAAGGAG

Length

16 nucleotides

Bulged bases

4V8E|1|DA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|DA|C|1116
4V8E|1|DA|G|1117
4V8E|1|DA|C|1118
*
4V8E|1|DA|G|1155
4V8E|1|DA|G|1156
4V8E|1|DA|A|1157
4V8E|1|DA|C|1158
4V8E|1|DA|U|1159
*
4V8E|1|DA|G|1177
4V8E|1|DA|G|1178
4V8E|1|DA|A|1179
4V8E|1|DA|A|1180
4V8E|1|DA|G|1181
4V8E|1|DA|G|1182
4V8E|1|DA|A|1183
4V8E|1|DA|G|1184

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DE

30S RIBOSOMAL PROTEIN S2

Chain DJ

30S RIBOSOMAL PROTEIN S7

Chain DL

30S RIBOSOMAL PROTEIN S9

Chain DQ

30S RIBOSOMAL PROTEIN S14