J3_4V8E_040
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 4V8E|1|AA|U|72, 4V8E|1|AA|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8E_040 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.1085
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8E|1|AA|A|56
4V8E|1|AA|C|57
*
4V8E|1|AA|G|70
4V8E|1|AA|A|71
4V8E|1|AA|U|72
4V8E|1|AA|A|73
4V8E|1|AA|A|74
4V8E|1|AA|G|75
4V8E|1|AA|C|76
*
4V8E|1|AA|G|110
4V8E|1|AA|A|111
4V8E|1|AA|U|112
4V8E|1|AA|G|113
4V8E|1|AA|U|114
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain A7
- 50S ribosomal protein L34
- Chain AT
- 50S ribosomal protein L23
- Chain AW
- 50S ribosomal protein L29
Coloring options: