J3_4V8E_063

3D structure

PDB id

4V8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGGAUGUUG*CAUCAUUUAAAGAGUG*CUCACUG

Length

33 nucleotides

Bulged bases

4V8E|1|CA|U|1108, 4V8E|1|CA|A|1131, 4V8E|1|CA|A|1132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8E|1|CA|C|1100
4V8E|1|CA|A|1101
4V8E|1|CA|G|1102
4V8E|1|CA|G|1103
4V8E|1|CA|A|1104
4V8E|1|CA|U|1105
4V8E|1|CA|G|1106
4V8E|1|CA|U|1107
4V8E|1|CA|U|1108
4V8E|1|CA|G|1109
*
4V8E|1|CA|C|1123
4V8E|1|CA|A|1124
4V8E|1|CA|U|1125
4V8E|1|CA|C|1126
4V8E|1|CA|A|1127
4V8E|1|CA|U|1128
4V8E|1|CA|U|1129
4V8E|1|CA|U|1130
4V8E|1|CA|A|1131
4V8E|1|CA|A|1132
4V8E|1|CA|A|1133
4V8E|1|CA|G|1134
4V8E|1|CA|A|1135
4V8E|1|CA|G|1136
4V8E|1|CA|U|1137
4V8E|1|CA|G|1138
*
4V8E|1|CA|C|1147
4V8E|1|CA|U|1148
4V8E|1|CA|C|1149
4V8E|1|CA|A|1150
4V8E|1|CA|C|1151
4V8E|1|CA|U|1152
4V8E|1|CA|G|1153

Current chains

Chain CA

RNA (2912-MER)

Nearby chains

Chain CP

50S ribosomal protein L16