J3_4V8E_066
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V8E|1|CA|A|2401, 4V8E|1|CA|A|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8E_066 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1054
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8E|1|CA|G|2295
4V8E|1|CA|C|2296
4V8E|1|CA|C|2297
*
4V8E|1|CA|G|2397
4V8E|1|CA|C|2398
4V8E|1|CA|C|2399
4V8E|1|CA|U|2400
4V8E|1|CA|A|2401
4V8E|1|CA|G|2402
4V8E|1|CA|U|2403
4V8E|1|CA|G|2404
4V8E|1|CA|A|2405
4V8E|1|CA|A|2406
4V8E|1|CA|C|2407
4V8E|1|CA|C|2408
*
4V8E|1|CA|G|2434
4V8E|1|CA|A|2435
4V8E|1|CA|U|2436
4V8E|1|CA|C|2437
4V8E|1|CA|A|2438
4V8E|1|CA|A|2439
4V8E|1|CA|C|2440
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C3
- 50S ribosomal protein L27
- Chain C6
- 50S ribosomal protein L33
- Chain C8
- 50S ribosomal protein L35
- Chain CO
- 50S ribosomal protein L15
- Chain CZ
- 50S ribosomal protein L28
- Chain DD
- TRNA-TYR
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