J3_4V8F_008

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V8F|1|AA|A|2518, 4V8F|1|AA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8F_008 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.062

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

4V8F|1|AA|C|2517
4V8F|1|AA|A|2518
4V8F|1|AA|U|2519
4V8F|1|AA|C|2520
*
4V8F|1|AA|G|2545
4V8F|1|AA|U|2546
4V8F|1|AA|U|2547
*
4V8F|1|AA|A|2561
4V8F|1|AA|U|2562
4V8F|1|AA|U|2563
4V8F|1|AA|A|2564
4V8F|1|AA|A|2565
4V8F|1|AA|A|2566
4V8F|1|AA|G|2567

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AN

50S ribosomal protein L14