J3_4V8F_014
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUACC*GGGCGA
- Length
- 27 nucleotides
- Bulged bases
- 4V8F|1|BA|A|975, 4V8F|1|BA|G|976, 4V8F|1|BA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8F_014 not in the Motif Atlas
- Homologous match to J3_6CZR_062
- Geometric discrepancy: 0.1665
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V8F|1|BA|U|955
4V8F|1|BA|U|956
4V8F|1|BA|U|957
4V8F|1|BA|A|958
4V8F|1|BA|A|959
4V8F|1|BA|U|960
4V8F|1|BA|U|961
4V8F|1|BA|C|962
*
4V8F|1|BA|G|973
4V8F|1|BA|A|974
4V8F|1|BA|A|975
4V8F|1|BA|G|976
4V8F|1|BA|A|977
4V8F|1|BA|A|978
4V8F|1|BA|C|979
4V8F|1|BA|C|980
4V8F|1|BA|U|981
4V8F|1|BA|U|982
4V8F|1|BA|A|983
4V8F|1|BA|C|984
4V8F|1|BA|C|985
*
4V8F|1|BA|G|1220
4V8F|1|BA|G|1221
4V8F|1|BA|G|1222
4V8F|1|BA|C|1223
4V8F|1|BA|G|1224
4V8F|1|BA|A|1225
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- Transfer RNA; tRNA
- Chain BM
- 30S RIBOSOMAL PROTEIN S10
- Chain BP
- 30S RIBOSOMAL PROTEIN S13
- Chain BQ
- 30S RIBOSOMAL PROTEIN S14
- Chain BV
- 30S RIBOSOMAL PROTEIN S19
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